| cvpack/__init__.py |
(no function) |
26 |
0 |
0 |
100% |
| cvpack/angle.py |
Angle.__init__ |
5 |
0 |
0 |
100% |
| cvpack/angle.py |
(no function) |
7 |
0 |
0 |
100% |
| cvpack/atomic_function.py |
AtomicFunction.__init__ |
11 |
1 |
0 |
91% |
| cvpack/atomic_function.py |
AtomicFunction._fromCustomForce |
31 |
5 |
0 |
84% |
| cvpack/atomic_function.py |
AtomicFunction._fromHarmonicBondForce |
8 |
0 |
0 |
100% |
| cvpack/atomic_function.py |
AtomicFunction._fromHarmonicAngleForce |
8 |
0 |
0 |
100% |
| cvpack/atomic_function.py |
AtomicFunction._fromPeriodicTorsionForce |
9 |
0 |
0 |
100% |
| cvpack/atomic_function.py |
AtomicFunction.fromOpenMMForce |
9 |
1 |
0 |
89% |
| cvpack/atomic_function.py |
(no function) |
21 |
0 |
0 |
100% |
| cvpack/attraction_strength.py |
AttractionStrength.__init__ |
37 |
1 |
0 |
97% |
| cvpack/attraction_strength.py |
(no function) |
11 |
0 |
0 |
100% |
| cvpack/base_custom_function.py |
BaseCustomFunction._extractParameters |
8 |
0 |
0 |
100% |
| cvpack/base_custom_function.py |
BaseCustomFunction._addParameters |
9 |
0 |
0 |
100% |
| cvpack/base_custom_function.py |
(no function) |
7 |
0 |
0 |
100% |
| cvpack/base_path_cv.py |
BasePathCV.__init__ |
17 |
0 |
0 |
100% |
| cvpack/base_path_cv.py |
BasePathCV._generateName |
5 |
1 |
0 |
80% |
| cvpack/base_path_cv.py |
(no function) |
8 |
0 |
0 |
100% |
| cvpack/base_radius_of_gyration.py |
BaseRadiusOfGyration.__init__ |
7 |
0 |
0 |
100% |
| cvpack/base_radius_of_gyration.py |
(no function) |
5 |
0 |
0 |
100% |
| cvpack/base_rmsd.py |
BaseRMSD._getDefinedCoords |
4 |
0 |
0 |
100% |
| cvpack/base_rmsd.py |
BaseRMSD._getAllCoords |
4 |
0 |
0 |
100% |
| cvpack/base_rmsd.py |
(no function) |
7 |
0 |
0 |
100% |
| cvpack/base_rmsd_content.py |
BaseRMSDContent.__init__ |
16 |
4 |
0 |
75% |
| cvpack/base_rmsd_content.py |
BaseRMSDContent.__init__.get_expression |
9 |
0 |
0 |
100% |
| cvpack/base_rmsd_content.py |
BaseRMSDContent._loadPositions |
2 |
0 |
0 |
100% |
| cvpack/base_rmsd_content.py |
BaseRMSDContent._getAtomList |
10 |
0 |
0 |
100% |
| cvpack/base_rmsd_content.py |
BaseRMSDContent.getNumResidueBlocks |
1 |
0 |
0 |
100% |
| cvpack/base_rmsd_content.py |
(no function) |
15 |
0 |
0 |
100% |
| cvpack/centroid_function.py |
CentroidFunction.__init__ |
17 |
3 |
0 |
82% |
| cvpack/centroid_function.py |
(no function) |
10 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable.__getstate__ |
1 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable.__setstate__ |
1 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable.__copy__ |
1 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable.__deepcopy__ |
1 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable._registerCV |
5 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable._registerPeriodicBounds |
5 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable._setUnusedForceGroup |
5 |
1 |
0 |
80% |
| cvpack/collective_variable.py |
CollectiveVariable.getName |
1 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable.getUnit |
1 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable.getMassUnit |
1 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable.getPeriodicBounds |
1 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable.addToSystem |
3 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable.getValue |
3 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
CollectiveVariable.getEffectiveMass |
1 |
0 |
0 |
100% |
| cvpack/collective_variable.py |
(no function) |
28 |
0 |
0 |
100% |
| cvpack/composite_rmsd.py |
_Stub.__init__ |
1 |
1 |
0 |
0% |
| cvpack/composite_rmsd.py |
CompositeRMSD.__init__ |
8 |
0 |
0 |
100% |
| cvpack/composite_rmsd.py |
(no function) |
13 |
2 |
0 |
85% |
| cvpack/distance.py |
Distance.__init__ |
4 |
0 |
0 |
100% |
| cvpack/distance.py |
(no function) |
6 |
0 |
0 |
100% |
| cvpack/helix_angle_content.py |
HelixAngleContent.__init__ |
13 |
0 |
0 |
100% |
| cvpack/helix_angle_content.py |
HelixAngleContent.__init__.find_alpha_carbon |
4 |
0 |
0 |
100% |
| cvpack/helix_angle_content.py |
(no function) |
9 |
0 |
0 |
100% |
| cvpack/helix_hbond_content.py |
HelixHBondContent.__init__ |
12 |
0 |
0 |
100% |
| cvpack/helix_hbond_content.py |
HelixHBondContent.__init__.find_atom |
4 |
0 |
0 |
100% |
| cvpack/helix_hbond_content.py |
(no function) |
10 |
0 |
0 |
100% |
| cvpack/helix_rmsd_content.py |
HelixRMSDContent.__init__ |
3 |
0 |
0 |
100% |
| cvpack/helix_rmsd_content.py |
(no function) |
9 |
0 |
0 |
100% |
| cvpack/helix_torsion_content.py |
HelixTorsionContent.__init__ |
12 |
0 |
0 |
100% |
| cvpack/helix_torsion_content.py |
HelixTorsionContent.__init__.find_atom |
4 |
0 |
0 |
100% |
| cvpack/helix_torsion_content.py |
(no function) |
9 |
0 |
0 |
100% |
| cvpack/meta_collective_variable.py |
MetaCollectiveVariable.__init__ |
11 |
1 |
0 |
91% |
| cvpack/meta_collective_variable.py |
MetaCollectiveVariable.getInnerVariables |
1 |
0 |
0 |
100% |
| cvpack/meta_collective_variable.py |
MetaCollectiveVariable.getInnerValues |
2 |
0 |
0 |
100% |
| cvpack/meta_collective_variable.py |
MetaCollectiveVariable.getInnerEffectiveMasses |
3 |
0 |
0 |
100% |
| cvpack/meta_collective_variable.py |
MetaCollectiveVariable.getParameterDefaultValues |
1 |
0 |
0 |
100% |
| cvpack/meta_collective_variable.py |
MetaCollectiveVariable.getParameterValues |
1 |
0 |
0 |
100% |
| cvpack/meta_collective_variable.py |
MetaCollectiveVariable.getParameterDerivatives |
3 |
0 |
0 |
100% |
| cvpack/meta_collective_variable.py |
(no function) |
17 |
0 |
0 |
100% |
| cvpack/number_of_contacts.py |
NumberOfContacts.__init__ |
25 |
0 |
0 |
100% |
| cvpack/number_of_contacts.py |
(no function) |
10 |
0 |
0 |
100% |
| cvpack/openmm_force_wrapper.py |
OpenMMForceWrapper.__init__ |
8 |
0 |
0 |
100% |
| cvpack/openmm_force_wrapper.py |
OpenMMForceWrapper.__getattr__ |
5 |
5 |
0 |
0% |
| cvpack/openmm_force_wrapper.py |
OpenMMForceWrapper.__getattr__._wrapped_method |
1 |
1 |
0 |
0% |
| cvpack/openmm_force_wrapper.py |
(no function) |
9 |
0 |
0 |
100% |
| cvpack/path/__init__.py |
(no function) |
1 |
0 |
0 |
100% |
| cvpack/path/path.py |
Metric.__init__ |
1 |
0 |
0 |
100% |
| cvpack/path/path.py |
Metric.__repr__ |
1 |
1 |
0 |
0% |
| cvpack/path/path.py |
Metric.__eq__ |
1 |
0 |
0 |
100% |
| cvpack/path/path.py |
Metric.__getstate__ |
1 |
0 |
0 |
100% |
| cvpack/path/path.py |
Metric.__setstate__ |
1 |
0 |
0 |
100% |
| cvpack/path/path.py |
(no function) |
11 |
0 |
0 |
100% |
| cvpack/path_in_cv_space.py |
PathInCVSpace.__init__ |
22 |
2 |
0 |
91% |
| cvpack/path_in_cv_space.py |
(no function) |
11 |
0 |
0 |
100% |
| cvpack/path_in_rmsd_space.py |
PathInRMSDSpace.__init__ |
10 |
1 |
0 |
90% |
| cvpack/path_in_rmsd_space.py |
(no function) |
9 |
0 |
0 |
100% |
| cvpack/radius_of_gyration.py |
RadiusOfGyration.__init__ |
7 |
0 |
0 |
100% |
| cvpack/radius_of_gyration.py |
(no function) |
6 |
0 |
0 |
100% |
| cvpack/radius_of_gyration_sq.py |
RadiusOfGyrationSq.__init__ |
6 |
0 |
0 |
100% |
| cvpack/radius_of_gyration_sq.py |
(no function) |
6 |
0 |
0 |
100% |
| cvpack/reporting/__init__.py |
(no function) |
3 |
0 |
0 |
100% |
| cvpack/reporting/custom_writer.py |
CustomWriter.initialize |
0 |
0 |
0 |
100% |
| cvpack/reporting/custom_writer.py |
CustomWriter.getHeaders |
1 |
1 |
0 |
0% |
| cvpack/reporting/custom_writer.py |
CustomWriter.getValues |
1 |
1 |
0 |
0% |
| cvpack/reporting/custom_writer.py |
(no function) |
7 |
0 |
0 |
100% |
| cvpack/reporting/cv_writer.py |
CVWriter.__init__ |
7 |
2 |
0 |
71% |
| cvpack/reporting/cv_writer.py |
CVWriter.getHeaders |
6 |
0 |
0 |
100% |
| cvpack/reporting/cv_writer.py |
CVWriter.getValues |
7 |
0 |
0 |
100% |
| cvpack/reporting/cv_writer.py |
(no function) |
8 |
0 |
0 |
100% |
| cvpack/reporting/meta_cv_writer.py |
MetaCVWriter.__init__ |
7 |
0 |
0 |
100% |
| cvpack/reporting/meta_cv_writer.py |
MetaCVWriter.getHeaders |
11 |
0 |
0 |
100% |
| cvpack/reporting/meta_cv_writer.py |
MetaCVWriter.getHeaders.add_header |
1 |
0 |
0 |
100% |
| cvpack/reporting/meta_cv_writer.py |
MetaCVWriter.getValues |
19 |
0 |
0 |
100% |
| cvpack/reporting/meta_cv_writer.py |
(no function) |
9 |
0 |
0 |
100% |
| cvpack/reporting/state_data_reporter.py |
StateDataReporter.__init__ |
5 |
1 |
0 |
80% |
| cvpack/reporting/state_data_reporter.py |
StateDataReporter._expand |
2 |
0 |
0 |
100% |
| cvpack/reporting/state_data_reporter.py |
StateDataReporter._initializeConstants |
4 |
0 |
0 |
100% |
| cvpack/reporting/state_data_reporter.py |
StateDataReporter._constructHeaders |
1 |
0 |
0 |
100% |
| cvpack/reporting/state_data_reporter.py |
StateDataReporter._constructReportValues |
1 |
0 |
0 |
100% |
| cvpack/reporting/state_data_reporter.py |
(no function) |
11 |
0 |
0 |
100% |
| cvpack/residue_coordination.py |
ResidueCoordination.__init__ |
18 |
0 |
0 |
100% |
| cvpack/residue_coordination.py |
ResidueCoordination.getReferenceValue |
1 |
1 |
0 |
0% |
| cvpack/residue_coordination.py |
ResidueCoordination.setReferenceValue |
4 |
0 |
0 |
100% |
| cvpack/residue_coordination.py |
(no function) |
12 |
0 |
0 |
100% |
| cvpack/rmsd.py |
RMSD.__init__ |
6 |
0 |
0 |
100% |
| cvpack/rmsd.py |
RMSD.getNullBondForce |
5 |
0 |
0 |
100% |
| cvpack/rmsd.py |
(no function) |
9 |
0 |
0 |
100% |
| cvpack/serialization/__init__.py |
(no function) |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
Serializable.registerTag |
3 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
SerializableAtom.__init__ |
8 |
2 |
0 |
75% |
| cvpack/serialization/serialization.py |
SerializableAtom.__getstate__ |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
SerializableAtom.__setstate__ |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
SerializableAtom.element |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
SerializableResidue.__init__ |
7 |
1 |
0 |
86% |
| cvpack/serialization/serialization.py |
SerializableResidue.__getstate__ |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
SerializableResidue.__setstate__ |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
SerializableResidue.__len__ |
1 |
1 |
0 |
0% |
| cvpack/serialization/serialization.py |
SerializableResidue.atoms |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
SerializableForce.__init__ |
2 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
SerializableForce.__getattr__ |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
SerializableForce.__getstate__ |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
SerializableForce.__setstate__ |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
serialize |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
deserialize |
1 |
0 |
0 |
100% |
| cvpack/serialization/serialization.py |
(no function) |
29 |
0 |
0 |
100% |
| cvpack/sheet_rmsd_content.py |
SheetRMSDContent.__init__ |
9 |
1 |
0 |
89% |
| cvpack/sheet_rmsd_content.py |
(no function) |
11 |
0 |
0 |
100% |
| cvpack/shortest_distance.py |
ShortestDistance.__init__ |
16 |
0 |
0 |
100% |
| cvpack/shortest_distance.py |
(no function) |
9 |
0 |
0 |
100% |
| cvpack/torsion.py |
Torsion.__init__ |
5 |
0 |
0 |
100% |
| cvpack/torsion.py |
(no function) |
7 |
0 |
0 |
100% |
| cvpack/torsion_similarity.py |
TorsionSimilarity.__init__ |
9 |
0 |
0 |
100% |
| cvpack/torsion_similarity.py |
(no function) |
8 |
0 |
0 |
100% |
| cvpack/units/__init__.py |
(no function) |
1 |
0 |
0 |
100% |
| cvpack/units/units.py |
Unit.__init__ |
7 |
0 |
0 |
100% |
| cvpack/units/units.py |
Unit.__repr__ |
1 |
1 |
0 |
0% |
| cvpack/units/units.py |
Unit.__getstate__ |
1 |
0 |
0 |
100% |
| cvpack/units/units.py |
Unit.__setstate__ |
1 |
0 |
0 |
100% |
| cvpack/units/units.py |
Unit.visit_Name |
1 |
0 |
0 |
100% |
| cvpack/units/units.py |
Quantity.__init__ |
3 |
0 |
0 |
100% |
| cvpack/units/units.py |
Quantity.__repr__ |
1 |
0 |
0 |
100% |
| cvpack/units/units.py |
Quantity.__getstate__ |
1 |
0 |
0 |
100% |
| cvpack/units/units.py |
Quantity.__setstate__ |
1 |
0 |
0 |
100% |
| cvpack/units/units.py |
Quantity.value |
1 |
0 |
0 |
100% |
| cvpack/units/units.py |
Quantity.in_md_units |
1 |
1 |
0 |
0% |
| cvpack/units/units.py |
in_md_units |
6 |
1 |
0 |
83% |
| cvpack/units/units.py |
value_in_md_units |
3 |
0 |
0 |
100% |
| cvpack/units/units.py |
(no function) |
28 |
0 |
0 |
100% |
| cvpack/utils.py |
evaluate_in_context |
19 |
0 |
0 |
100% |
| cvpack/utils.py |
convert_to_matrix |
5 |
1 |
0 |
80% |
| cvpack/utils.py |
get_single_force_state |
15 |
8 |
0 |
47% |
| cvpack/utils.py |
compute_effective_mass |
9 |
0 |
0 |
100% |
| cvpack/utils.py |
preprocess_args |
5 |
0 |
0 |
100% |
| cvpack/utils.py |
preprocess_args.convert |
19 |
1 |
0 |
95% |
| cvpack/utils.py |
preprocess_args.wrapper |
4 |
0 |
0 |
100% |
| cvpack/utils.py |
(no function) |
16 |
0 |
0 |
100% |